STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1B6Q5R2Uncharacterized protein. (302 aa)    
Predicted Functional Partners:
C5XKS0_SORBI
UmuC domain-containing protein.
    
 0.667
C5YE32_SORBI
AAA domain-containing protein.
     
 0.538
A0A194YPQ3
Protein kinase domain-containing protein.
      
 0.511
A0A1Z5RCL7
Lipase_GDSL domain-containing protein.
      
 0.508
C5WSZ5_SORBI
Lipase_GDSL domain-containing protein.
      
 0.482
A0A1B6QK27
Ubiquitin-like domain-containing protein.
    
  0.457
C5XIY6_SORBI
Ubiquitin-like domain-containing protein.
    
  0.457
C5Z0N6_SORBI
Ubiquitin-like domain-containing protein.
    
  0.457
A0A194YM72
DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family.
    
 0.408
A0A1B6PLB5
Uncharacterized protein.
    
 0.408
Your Current Organism:
Sorghum bicolor
NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum
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