STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1B6QGI6V-SNARE coiled-coil homology domain-containing protein. (1113 aa)    
Predicted Functional Partners:
C5XTD7_SORBI
t-SNARE coiled-coil homology domain-containing protein.
  
 
 
 0.594
C5X4S3_SORBI
Sec8_exocyst domain-containing protein.
  
 
 
 0.587
A0A1B6QAQ0
t-SNARE coiled-coil homology domain-containing protein.
    
 
 0.505
A0A1B6QFB8
Uncharacterized protein.
    
 
 0.505
C5WTM4_SORBI
t-SNARE coiled-coil homology domain-containing protein.
    
 
 0.505
C5YNT3_SORBI
Uncharacterized protein.
  
     0.503
A0A1B6PHG5
Uncharacterized protein.
  
     0.499
C5XG50_SORBI
Uncharacterized protein.
  
     0.481
C5YXZ1_SORBI
CNH domain-containing protein.
  
     0.470
C5WMB4_SORBI
Mic1 domain-containing protein.
  
     0.458
Your Current Organism:
Sorghum bicolor
NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum
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