STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1B6QGJ0Uncharacterized protein. (1243 aa)    
Predicted Functional Partners:
C5WT39_SORBI
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.990
C5XHW5_SORBI
WD_REPEATS_REGION domain-containing protein.
    
 0.987
A0A1W0W3U4
CID domain-containing protein.
    
 0.976
A0A1B6PAU9
TPR_REGION domain-containing protein.
    
 0.975
A0A1B6QIE2
Fip1 domain-containing protein.
   
 0.975
C5YI06_SORBI
CID domain-containing protein.
    
 0.971
C5YSM7_SORBI
Uncharacterized protein.
   
 0.967
C5Z8U1_SORBI
RRM domain-containing protein.
   
 0.966
C5Z7U3_SORBI
Uncharacterized protein.
   
 0.964
C5WS11_SORBI
Uncharacterized protein.
   
 0.957
Your Current Organism:
Sorghum bicolor
NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum
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