A0A1B6QI78 protein (Sorghum bicolor) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1B6QI78

Uncharacterized protein. (840 aa)

Predicted Functional Partners:

C5XUM4_SORBI

0.497

A0A1B6PN20

0.470

C5YIY1_SORBI

0.470

C5YJ82_SORBI

0.467

C5YX27_SORBI

0.464

C5YH21_SORBI

0.436

A0A1W0W7D2

0.421

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1B6PN20	A0A1B6QI78	A0A1B6PN20	A0A1B6QI78	26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	Uncharacterized protein.	0.470
A0A1B6PN20	C5XUM4_SORBI	A0A1B6PN20	C5XUM4	26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	26S proteasome non-ATPase regulatory subunit 2 homolog; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.998
A0A1B6PN20	C5YH21_SORBI	A0A1B6PN20	C5YH21	26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	PCI domain-containing protein.	0.994
A0A1B6PN20	C5YIY1_SORBI	A0A1B6PN20	C5YIY1	26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.900
A0A1B6PN20	C5YX27_SORBI	A0A1B6PN20	C5YX27	26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	RPN13_C domain-containing protein.	0.992
A0A1B6QI78	A0A1B6PN20	A0A1B6QI78	A0A1B6PN20	Uncharacterized protein.	26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.470
A0A1B6QI78	A0A1W0W7D2	A0A1B6QI78	A0A1W0W7D2	Uncharacterized protein.	RING-type domain-containing protein.	0.421
A0A1B6QI78	C5XUM4_SORBI	A0A1B6QI78	C5XUM4	Uncharacterized protein.	26S proteasome non-ATPase regulatory subunit 2 homolog; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.497
A0A1B6QI78	C5YH21_SORBI	A0A1B6QI78	C5YH21	Uncharacterized protein.	PCI domain-containing protein.	0.436
A0A1B6QI78	C5YIY1_SORBI	A0A1B6QI78	C5YIY1	Uncharacterized protein.	26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.470
A0A1B6QI78	C5YJ82_SORBI	A0A1B6QI78	C5YJ82	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.467
A0A1B6QI78	C5YX27_SORBI	A0A1B6QI78	C5YX27	Uncharacterized protein.	RPN13_C domain-containing protein.	0.464
A0A1W0W7D2	A0A1B6QI78	A0A1W0W7D2	A0A1B6QI78	RING-type domain-containing protein.	Uncharacterized protein.	0.421
A0A1W0W7D2	C5YJ82_SORBI	A0A1W0W7D2	C5YJ82	RING-type domain-containing protein.	TPR_REGION domain-containing protein.	0.979
C5XUM4_SORBI	A0A1B6PN20	C5XUM4	A0A1B6PN20	26S proteasome non-ATPase regulatory subunit 2 homolog; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.998
C5XUM4_SORBI	A0A1B6QI78	C5XUM4	A0A1B6QI78	26S proteasome non-ATPase regulatory subunit 2 homolog; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	Uncharacterized protein.	0.497
C5XUM4_SORBI	C5YH21_SORBI	C5XUM4	C5YH21	26S proteasome non-ATPase regulatory subunit 2 homolog; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	PCI domain-containing protein.	0.999
C5XUM4_SORBI	C5YIY1_SORBI	C5XUM4	C5YIY1	26S proteasome non-ATPase regulatory subunit 2 homolog; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.998
C5XUM4_SORBI	C5YX27_SORBI	C5XUM4	C5YX27	26S proteasome non-ATPase regulatory subunit 2 homolog; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	RPN13_C domain-containing protein.	0.997
C5YH21_SORBI	A0A1B6PN20	C5YH21	A0A1B6PN20	PCI domain-containing protein.	26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.994

page 1 of 2

Server load: low (18%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About