STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1B6QIK6Uncharacterized protein. (808 aa)    
Predicted Functional Partners:
C5Z5Q8_SORBI
Tr-type G domain-containing protein.
   
 0.977
A0A1W0VRL2
MPN domain-containing protein.
   
 0.974
C5XL26_SORBI
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.962
A0A1W0W7F3
Uncharacterized protein.
   
 0.949
C5YP81_SORBI
TPR_REGION domain-containing protein.
   
 0.945
C5YWH8_SORBI
PRP1_N domain-containing protein.
   
 0.945
A0A1Z5RLV9
Uncharacterized protein.
   
 0.939
A0A1B6Q970
Small nuclear ribonucleoprotein-associated protein.
    
 0.937
B3VTC7_SORBI
Small nuclear ribonucleoprotein Sm D2.
   
 0.924
C5YCD9_SORBI
Small nuclear ribonucleoprotein Sm D2.
   
 0.924
Your Current Organism:
Sorghum bicolor
NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum
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