STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1W0VTZ5Epimerase domain-containing protein. (189 aa)    
Predicted Functional Partners:
C5WV32_SORBI
Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.
   
 0.691
C5XIN8_SORBI
S10_plectin domain-containing protein.
   
 0.640
C5YGH8_SORBI
S10_plectin domain-containing protein.
   
 0.640
C5Y3N7_SORBI
Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.
   
 0.621
C5YR16_SORBI
Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.
   
 0.621
A0A1Z5S5F3
Uncharacterized protein.
   
 0.612
A0A1Z5S9M6
Uncharacterized protein.
   
 0.612
C5XQP0_SORBI
KOW domain-containing protein.
   
 
 0.606
A0A1Z5SAA0
Uncharacterized protein.
   
  0.603
A0A1Z5SBA4
Uncharacterized protein.
   
  0.603
Your Current Organism:
Sorghum bicolor
NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.