STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1W0VYY7RING-CH-type domain-containing protein. (312 aa)    
Predicted Functional Partners:
A0A1B6PCC8
Uncharacterized protein.
  
     0.497
A0A1B6PL32
C2H2-type domain-containing protein.
  
     0.463
C5XC82_SORBI
BHLH domain-containing protein.
  
     0.456
A0A1Z5RC84
Uncharacterized protein.
  
 
 
 0.448
A0A194YPS5
Uncharacterized protein.
  
     0.437
C5WQI9_SORBI
Uncharacterized protein.
  
     0.433
A0A1B6PIE3
UBX domain-containing protein.
  
 
 
 0.432
A0A1B6QHV0
Uncharacterized protein.
  
     0.429
A0A1Z5R4C0
NOT2_3_5 domain-containing protein.
    
 
 0.415
C5XTP2_SORBI
NOT2_3_5 domain-containing protein.
    
 
 0.415
Your Current Organism:
Sorghum bicolor
NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum
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