STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Z5R0K3Uncharacterized protein. (1562 aa)    
Predicted Functional Partners:
C5WWP0_SORBI
Uncharacterized protein.
    
 0.881
A0A1Z5S785
Uncharacterized protein.
    
 0.875
A0A194YLN1
Uncharacterized protein.
   
 0.873
A0A1Z5S6L8
LisH domain-containing protein.
   
 0.864
C5YCA7_SORBI
Uncharacterized protein.
   
 0.864
A0A1B6QFZ0
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
   
 0.861
C5X0B4_SORBI
Transcriptional adapter.
    
 0.839
A0A1B6Q7W5
Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]
    
 0.802
C5XPR9_SORBI
TFIID_20kDa domain-containing protein.
    
 0.764
C5XQH8_SORBI
TFIID_20kDa domain-containing protein.
    
 0.764
Your Current Organism:
Sorghum bicolor
NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum
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