STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Z5RCT6LysM domain-containing protein. (163 aa)    
Predicted Functional Partners:
C5WZ72_SORBI
Uncharacterized protein; Belongs to the cytochrome c oxidase subunit 6A family.
   
 0.465
C5Z101_SORBI
Uncharacterized protein.
   
 0.465
A0A1B6PAD6
Uncharacterized protein.
   
 0.454
C5XQZ8_SORBI
Uncharacterized protein.
   
 0.454
C5Z3U6_SORBI
Uncharacterized protein.
   
 0.454
A0A1B6QFL9
Uncharacterized protein.
   
 0.406
A0A1B6QMT0
Uncharacterized protein.
   
 0.406
A0A1Z5RNH5
Cytochrome c oxidase subunit; This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.
   
 0.406
A0A1B6P8N6
Beta-hexosaminidase.
    
 0.405
A0A1B6Q7F9
Beta-hexosaminidase.
    
 0.405
Your Current Organism:
Sorghum bicolor
NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum
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