STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Z5RKM8DUF1995 domain-containing protein. (339 aa)    
Predicted Functional Partners:
A0A194YRM4
Foie-gras_1 domain-containing protein.
      
 0.537
C5WPK4_SORBI
2Fe-2S ferredoxin-type domain-containing protein.
   
  
 0.524
C5YDX9_SORBI
Uncharacterized protein.
      
 0.499
A0A194YPM2
Uncharacterized protein.
  
     0.446
C5Y3B8_SORBI
Uncharacterized protein.
  
     0.443
A0A1B6Q913
Uncharacterized protein.
  
     0.421
A0A1Z5S5J5
Fmp27_GFWDK domain-containing protein.
  
     0.421
A0A1Z5RJ25
Xpo1 domain-containing protein.
  
     0.414
C5WZR3_SORBI
Fmp27_GFWDK domain-containing protein.
  
     0.411
C5WZE7_SORBI
SAP domain-containing protein.
  
     0.408
Your Current Organism:
Sorghum bicolor
NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.