STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Z5RM22Uncharacterized protein. (483 aa)    
Predicted Functional Partners:
A0A1W0W6T5
Uncharacterized protein.
    
  0.684
A0A1B6QK27
Ubiquitin-like domain-containing protein.
    
  0.581
C5XIY6_SORBI
Ubiquitin-like domain-containing protein.
    
  0.581
C5Z0N6_SORBI
Ubiquitin-like domain-containing protein.
    
  0.581
C5XMD2_SORBI
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
      
 0.574
A0A1B6Q6J9
Uncharacterized protein.
      
 0.546
A0A1Z5S590
Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.
      
 0.538
A0A1Z5S5J4
PAS_2 domain-containing protein.
      
 0.538
C5Z7A0_SORBI
Auxin efflux carrier component; May act as a component of the auxin efflux carrier. Belongs to the auxin efflux carrier (TC 2.A.69.1) family.
      
 0.523
C5YP75_SORBI
Uncharacterized protein.
      
 0.516
Your Current Organism:
Sorghum bicolor
NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.