STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Z5RNW9Peptidase_M48 domain-containing protein. (463 aa)    
Predicted Functional Partners:
A0A1B6P8D5
Uncharacterized protein.
    
 
 0.721
C5YXI1_SORBI
G domain-containing protein.
     
 0.669
A0A1B6Q4S1
AAA domain-containing protein.
   
 
 0.630
C5XNS5_SORBI
AAA domain-containing protein.
   
 
 0.630
C5YX11_SORBI
AAA domain-containing protein.
   
 
 0.630
A0A1Z5RDH7
Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family.
    
 
 0.593
A0A1B6PNW7
Uncharacterized protein.
  
  
 0.589
A0A1B6Q1Q5
AA_TRNA_LIGASE_II domain-containing protein.
  
  
 0.588
C5Y0Y9_SORBI
CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family.
      
 0.580
C5Z8A9_SORBI
Peptidase_M3 domain-containing protein.
  
  
 0.579
Your Current Organism:
Sorghum bicolor
NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum
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