STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Z5SA17PMR5N domain-containing protein. (443 aa)    
Predicted Functional Partners:
C5XK44_SORBI
Uncharacterized protein; Belongs to the glycosyltransferase 2 family.
   
  
 0.542
A0A1Z5S4Q9
Uncharacterized protein.
  
     0.521
C5WW16_SORBI
Uncharacterized protein.
  
     0.520
C5X9Z2_SORBI
Uncharacterized protein.
  
     0.511
C5XB42_SORBI
Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.
  
     0.507
C5YIK3_SORBI
PHD_Oberon domain-containing protein.
  
     0.507
C5YHX7_SORBI
B box-type domain-containing protein.
  
     0.504
C5XYI4_SORBI
Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.
  
     0.499
C5Y2M9_SORBI
Uncharacterized protein.
  
     0.498
C5Y055_SORBI
Uncharacterized protein.
  
     0.497
Your Current Organism:
Sorghum bicolor
NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum
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