STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Z5SAM2Uncharacterized protein. (636 aa)    
Predicted Functional Partners:
A0A1Z5R7X6
Uncharacterized protein.
    
 0.755
C5X7D7_SORBI
RPOLD domain-containing protein.
    
  0.666
C5X2I5_SORBI
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
    
 0.625
C5XSB8_SORBI
RPOL4c domain-containing protein.
    
  0.619
A0A1Z5S3V0
Uncharacterized protein.
    
  0.549
C5WSX7_SORBI
Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
    
  0.549
C5Z8T6_SORBI
Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
    
  0.549
C5X6I3_SORBI
RNA_pol_L_2 domain-containing protein.
    
  0.532
C5YC44_SORBI
RNA_pol_L_2 domain-containing protein.
    
  0.532
A0A1B6QJK0
Uncharacterized protein.
    
 0.500
Your Current Organism:
Sorghum bicolor
NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.