C5WU19_SORBI protein (Sorghum bicolor) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C5WU19_SORBI

X8 domain-containing protein. (615 aa)

Predicted Functional Partners:

C5WZT7_SORBI

0.901

C5WSM7_SORBI

0.891

C5X481_SORBI

0.877

A0A1B6QCX2

0.861

A0A194YNI4

0.838

C5XR43_SORBI

0.821

C5YFK4_SORBI

0.818

A0A194YNN3

0.801

A0A1B6QL55

0.782

C5Y713_SORBI

0.782

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A194YNI4	A0A194YNN3	A0A194YNI4	A0A194YNN3	Uncharacterized protein.	DUF5311 domain-containing protein.	0.997
A0A194YNI4	A0A1B6QCX2	A0A194YNI4	A0A1B6QCX2	Uncharacterized protein.	Uncharacterized protein.	0.992
A0A194YNI4	A0A1B6QL55	A0A194YNI4	A0A1B6QL55	Uncharacterized protein.	Uncharacterized protein.	0.988
A0A194YNI4	C5WSM7_SORBI	A0A194YNI4	C5WSM7	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A194YNI4	C5WU19_SORBI	A0A194YNI4	C5WU19	Uncharacterized protein.	X8 domain-containing protein.	0.838
A0A194YNI4	C5WZT7_SORBI	A0A194YNI4	C5WZT7	Uncharacterized protein.	Nuclear pore protein.	0.999
A0A194YNI4	C5X481_SORBI	A0A194YNI4	C5X481	Uncharacterized protein.	Nup54 domain-containing protein.	0.992
A0A194YNI4	C5XR43_SORBI	A0A194YNI4	C5XR43	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.992
A0A194YNI4	C5Y713_SORBI	A0A194YNI4	C5Y713	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.989
A0A194YNI4	C5YFK4_SORBI	A0A194YNI4	C5YFK4	Uncharacterized protein.	Uncharacterized protein.	0.989
A0A194YNN3	A0A194YNI4	A0A194YNN3	A0A194YNI4	DUF5311 domain-containing protein.	Uncharacterized protein.	0.997
A0A194YNN3	A0A1B6QCX2	A0A194YNN3	A0A1B6QCX2	DUF5311 domain-containing protein.	Uncharacterized protein.	0.979
A0A194YNN3	A0A1B6QL55	A0A194YNN3	A0A1B6QL55	DUF5311 domain-containing protein.	Uncharacterized protein.	0.992
A0A194YNN3	C5WSM7_SORBI	A0A194YNN3	C5WSM7	DUF5311 domain-containing protein.	Uncharacterized protein.	0.991
A0A194YNN3	C5WU19_SORBI	A0A194YNN3	C5WU19	DUF5311 domain-containing protein.	X8 domain-containing protein.	0.801
A0A194YNN3	C5WZT7_SORBI	A0A194YNN3	C5WZT7	DUF5311 domain-containing protein.	Nuclear pore protein.	0.986
A0A194YNN3	C5X481_SORBI	A0A194YNN3	C5X481	DUF5311 domain-containing protein.	Nup54 domain-containing protein.	0.970
A0A194YNN3	C5XR43_SORBI	A0A194YNN3	C5XR43	DUF5311 domain-containing protein.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.991
A0A194YNN3	C5Y713_SORBI	A0A194YNN3	C5Y713	DUF5311 domain-containing protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.992
A0A194YNN3	C5YFK4_SORBI	A0A194YNN3	C5YFK4	DUF5311 domain-containing protein.	Uncharacterized protein.	0.981

page 1 of 6

Server load: low (14%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About