STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C5X0J3_SORBISkp1 domain-containing protein; Belongs to the SKP1 family. (211 aa)    
Predicted Functional Partners:
C5Y8N2_SORBI
F-box domain-containing protein.
    
 0.811
A0A1Z5RPL6
RING-type domain-containing protein.
   
 0.732
C5XEZ9_SORBI
RING-type domain-containing protein.
   
 0.732
C5WXY8_SORBI
Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.
    
 0.725
A0A1B6PNQ1
MPN domain-containing protein.
   
 0.674
A0A1B6Q9V6
Eukaryotic translation initiation factor 3 subunit E; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.
   
  
 0.664
C5XEC3_SORBI
Uncharacterized protein.
   
 
 0.622
C5XQ56_SORBI
Uncharacterized protein.
   
 
 0.622
A0A1B6Q570
acidPPc domain-containing protein.
      
 0.617
C5Z5T0_SORBI
acidPPc domain-containing protein.
      
 0.617
Your Current Organism:
Sorghum bicolor
NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.