STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C5XA14_SORBIUncharacterized protein; Belongs to the DEAD box helicase family. (745 aa)    
Predicted Functional Partners:
C5WT96_SORBI
Uncharacterized protein.
   
 0.999
C5WTZ2_SORBI
PUM-HD domain-containing protein.
   
 
 0.999
C5X0P5_SORBI
Uncharacterized protein.
   
 0.996
C5XA68_SORBI
NUC153 domain-containing protein.
   
 
 0.996
A0A1B6QPK3
CBF domain-containing protein.
   
 
 0.994
A0A1B6PNC5
Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.
   
 
 0.987
C5XFN9_SORBI
Uncharacterized protein.
   
 
 0.987
C5Z011_SORBI
MI domain-containing protein.
   
 
 0.984
A0A1B6PJ51
Sas10 domain-containing protein.
   
 0.983
C5X4T5_SORBI
RRM domain-containing protein.
   
 
 0.980
Your Current Organism:
Sorghum bicolor
NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.