STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C5XFW2_SORBI3'-5' exonuclease domain-containing protein. (202 aa)    
Predicted Functional Partners:
A0A1W0VZV3
Uncharacterized protein.
   
 0.613
A0A1B6PMW5
Uncharacterized protein.
   
 
 0.583
A0A1B6QGN0
ATP-dependent DNA helicase 2 subunit KU80; Single-stranded DNA-dependent ATP-dependent helicase.
    
 
 0.499
A0A1Z5RP56
RECA_2 domain-containing protein.
    
 0.491
A0A1W0VV41
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
   
 0.458
C5WXH8_SORBI
FHA domain-containing protein.
    
 0.457
C5XMS3_SORBI
DUF1767 domain-containing protein.
     
 0.441
C5WR11_SORBI
Uncharacterized protein.
     
 0.439
A0A1B6QNS7
Macro domain-containing protein.
   
 
 0.423
C5XUH8_SORBI
DNA helicase; Belongs to the MCM family.
   
  
 0.401
Your Current Organism:
Sorghum bicolor
NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.