STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C5XH05_SORBIUncharacterized protein. (328 aa)    
Predicted Functional Partners:
A0A1B6P9L3
RING-type domain-containing protein.
    
 0.725
A0A1B6PMW9
RING-type domain-containing protein.
    
 0.725
A0A1Z5S6Q2
RING-type domain-containing protein.
    
 0.725
C5XME8_SORBI
RING-type domain-containing protein.
    
 0.725
Sb0012s019770
Chromo domain-containing protein.
    
 0.636
A0A1Z5R8Y0
WD_REPEATS_REGION domain-containing protein.
    
 0.544
C5YN03_SORBI
WD_REPEATS_REGION domain-containing protein.
    
 0.544
A0A1Z5RL65
Uncharacterized protein.
  
 
   0.526
A0A1Z5S9R0
OVATE domain-containing protein.
  
     0.523
C5Y9W1_SORBI
AAI domain-containing protein.
  
 
  0.515
Your Current Organism:
Sorghum bicolor
NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum
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