STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C5XS48_SORBIUncharacterized protein. (580 aa)    
Predicted Functional Partners:
C5YJP1_SORBI
HATPase_c domain-containing protein.
   
 0.635
A0A1B6PEY5
RRF domain-containing protein.
     
 0.618
C5YBC4_SORBI
RRF domain-containing protein.
     
 0.618
C5WQC9_SORBI
Uncharacterized protein.
   
 0.615
C5WRM5_SORBI
TPR_REGION domain-containing protein.
    
 0.610
C5X7A4_SORBI
Uncharacterized protein.
    
 0.609
C5YH07_SORBI
Uncharacterized protein.
    
 0.608
C5XTP9_SORBI
Uncharacterized protein.
    
 0.607
C5YUX5_SORBI
Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.
    
 0.607
A0A1B6P7Q5
APC1_C domain-containing protein.
    
 0.605
Your Current Organism:
Sorghum bicolor
NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum
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