STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C5Y1A9_SORBIBHLH domain-containing protein. (490 aa)    
Predicted Functional Partners:
A0A1W0VZV3
Uncharacterized protein.
    
 
 0.636
A0A1Z5R3D0
DNA_MISMATCH_REPAIR_2 domain-containing protein.
   
 
 0.562
C5XD67_SORBI
DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).
   
 
 0.562
C5WUQ8_SORBI
FRIGIDA-like protein; Belongs to the Frigida family.
  
     0.515
A0A1B6QC85
VQ domain-containing protein.
  
 
   0.513
C5YA87_SORBI
Uncharacterized protein.
  
     0.505
A0A1B6PCF7
DUF4378 domain-containing protein.
  
     0.504
C5WY47_SORBI
GTD-binding domain-containing protein.
  
     0.503
C5XR49_SORBI
Zinc_ribbon_12 domain-containing protein.
  
 
   0.503
C5YYM3_SORBI
Uncharacterized protein.
  
     0.502
Your Current Organism:
Sorghum bicolor
NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum
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