STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C5Y4W1_SORBIAmino_oxidase domain-containing protein. (587 aa)    
Predicted Functional Partners:
A0A1B6Q9T0
Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
  
  
 0.970
C5XNU3_SORBI
Uncharacterized protein.
     
 0.956
C5XX29_SORBI
Uncharacterized protein.
     
 0.956
PSY1
Chloroplast phytoene synthase 1.
  
 
 0.870
PSY3
Chloroplast phytoene synthase 3.
  
 
 0.870
C5YSI5_SORBI
Uncharacterized protein.
  
 
 0.870
C5XGI2_SORBI
FAD_binding_3 domain-containing protein.
 
 
 0.829
C5XYT6_SORBI
FAD_binding_3 domain-containing protein.
 
 
 0.828
C5WW75_SORBI
Uncharacterized protein.
  
 
 0.816
C5Z238_SORBI
Uncharacterized protein.
  
 
 0.812
Your Current Organism:
Sorghum bicolor
NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum
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