C5YCL1_SORBI protein (Sorghum bicolor) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C5YCL1_SORBI

RING-type domain-containing protein. (260 aa)

Predicted Functional Partners:

A0A1B6PDE0

0.657

C5WWI9_SORBI

0.577

C5WQS5_SORBI

0.525

C5WS18_SORBI

0.478

C5YUA9_SORBI

0.478

A0A1Z5RE65

0.450

C5XXW7_SORBI

0.450

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1B6PDE0	A0A1Z5RE65	A0A1B6PDE0	A0A1Z5RE65	PRKCSH domain-containing protein.	Uncharacterized protein.	0.974
A0A1B6PDE0	C5WQS5_SORBI	A0A1B6PDE0	C5WQS5	PRKCSH domain-containing protein.	Uncharacterized protein.	0.975
A0A1B6PDE0	C5WS18_SORBI	A0A1B6PDE0	C5WS18	PRKCSH domain-containing protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.979
A0A1B6PDE0	C5WWI9_SORBI	A0A1B6PDE0	C5WWI9	PRKCSH domain-containing protein.	PHB domain-containing protein.	0.771
A0A1B6PDE0	C5XXW7_SORBI	A0A1B6PDE0	C5XXW7	PRKCSH domain-containing protein.	Uncharacterized protein.	0.974
A0A1B6PDE0	C5YCL1_SORBI	A0A1B6PDE0	C5YCL1	PRKCSH domain-containing protein.	RING-type domain-containing protein.	0.657
A0A1B6PDE0	C5YUA9_SORBI	A0A1B6PDE0	C5YUA9	PRKCSH domain-containing protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.979
A0A1Z5RE65	A0A1B6PDE0	A0A1Z5RE65	A0A1B6PDE0	Uncharacterized protein.	PRKCSH domain-containing protein.	0.974
A0A1Z5RE65	C5WS18_SORBI	A0A1Z5RE65	C5WS18	Uncharacterized protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.906
A0A1Z5RE65	C5WWI9_SORBI	A0A1Z5RE65	C5WWI9	Uncharacterized protein.	PHB domain-containing protein.	0.629
A0A1Z5RE65	C5YCL1_SORBI	A0A1Z5RE65	C5YCL1	Uncharacterized protein.	RING-type domain-containing protein.	0.450
A0A1Z5RE65	C5YUA9_SORBI	A0A1Z5RE65	C5YUA9	Uncharacterized protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.906
C5WQS5_SORBI	A0A1B6PDE0	C5WQS5	A0A1B6PDE0	Uncharacterized protein.	PRKCSH domain-containing protein.	0.975
C5WQS5_SORBI	C5WS18_SORBI	C5WQS5	C5WS18	Uncharacterized protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.906
C5WQS5_SORBI	C5WWI9_SORBI	C5WQS5	C5WWI9	Uncharacterized protein.	PHB domain-containing protein.	0.629
C5WQS5_SORBI	C5YCL1_SORBI	C5WQS5	C5YCL1	Uncharacterized protein.	RING-type domain-containing protein.	0.525
C5WQS5_SORBI	C5YUA9_SORBI	C5WQS5	C5YUA9	Uncharacterized protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.907
C5WS18_SORBI	A0A1B6PDE0	C5WS18	A0A1B6PDE0	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	PRKCSH domain-containing protein.	0.979
C5WS18_SORBI	A0A1Z5RE65	C5WS18	A0A1Z5RE65	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Uncharacterized protein.	0.906
C5WS18_SORBI	C5WQS5_SORBI	C5WS18	C5WQS5	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Uncharacterized protein.	0.906

page 1 of 3

Server load: low (14%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About