STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C5YV63_SORBIEMC1_C domain-containing protein. (989 aa)    
Predicted Functional Partners:
A0A1B6QDF0
ER membrane protein complex subunit 3.
    
 0.983
C5WZL2_SORBI
Uncharacterized protein.
    
 0.983
C5YPW1_SORBI
Uncharacterized protein.
    
 0.981
C5Z6P3_SORBI
DUF2012 domain-containing protein.
    
 0.981
C5WSY6_SORBI
TPR_REGION domain-containing protein.
   
 0.972
C5XGS7_SORBI
Uncharacterized protein.
    
 0.969
C5YVC9_SORBI
Uncharacterized protein.
    
 0.969
A0A1B6QID0
Uncharacterized protein.
    
 0.965
C5YDD7_SORBI
Uncharacterized protein.
    
 0.965
C5Y200_SORBI
Uncharacterized protein.
   
 
 0.962
Your Current Organism:
Sorghum bicolor
NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.