STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C5YVG0_SORBIUBIQUITIN_CONJUGAT_2 domain-containing protein. (507 aa)    
Predicted Functional Partners:
A0A1B6P8P3
Uncharacterized protein.
    
 0.736
A0A1B6P8W2
HECT domain-containing protein.
   
 0.723
A0A1B6PJR9
Uncharacterized protein.
   
 0.723
C5YZ27_SORBI
HECT domain-containing protein.
   
 0.723
C5XPZ8_SORBI
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
   
 
 0.715
A0A194YN33
HECT domain-containing protein.
   
 0.700
A0A1B6PJT3
HECT domain-containing protein.
   
 0.700
A0A1B6QNN8
RING-type domain-containing protein.
    
 0.669
A0A194YQZ7
Uncharacterized protein.
    
 0.650
C5XH65_SORBI
E2_bind domain-containing protein.
   
 0.621
Your Current Organism:
Sorghum bicolor
NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum
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