C5YZ83_SORBI protein (Sorghum bicolor) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C5YZ83_SORBI

Uncharacterized protein. (414 aa)

Predicted Functional Partners:

C5Z3B1_SORBI

0.504

C5XGD6_SORBI

0.477

C5XY73_SORBI

0.466

A0A194YMX7

0.450

A0A1W0VUC0

0.434

A0A1B6QP05

0.433

C5YDD9_SORBI

0.429

A0A1B6Q3A3

0.424

C5WW32_SORBI

0.423

A0A1B6QPP3

0.422

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A194YMX7	C5XGD6_SORBI	A0A194YMX7	C5XGD6	Myb-like domain-containing protein.	TCP domain-containing protein.	0.487
A0A194YMX7	C5YZ83_SORBI	A0A194YMX7	C5YZ83	Myb-like domain-containing protein.	Uncharacterized protein.	0.450
A0A1B6Q3A3	A0A1B6QPP3	A0A1B6Q3A3	A0A1B6QPP3	Uncharacterized protein.	Uncharacterized protein.	0.497
A0A1B6Q3A3	C5XGD6_SORBI	A0A1B6Q3A3	C5XGD6	Uncharacterized protein.	TCP domain-containing protein.	0.492
A0A1B6Q3A3	C5XY73_SORBI	A0A1B6Q3A3	C5XY73	Uncharacterized protein.	TCP domain-containing protein.	0.496
A0A1B6Q3A3	C5YZ83_SORBI	A0A1B6Q3A3	C5YZ83	Uncharacterized protein.	Uncharacterized protein.	0.424
A0A1B6QP05	C5WW32_SORBI	A0A1B6QP05	C5WW32	Uncharacterized protein.	PORR domain-containing protein.	0.428
A0A1B6QP05	C5XY73_SORBI	A0A1B6QP05	C5XY73	Uncharacterized protein.	TCP domain-containing protein.	0.489
A0A1B6QP05	C5YZ83_SORBI	A0A1B6QP05	C5YZ83	Uncharacterized protein.	Uncharacterized protein.	0.433
A0A1B6QPP3	A0A1B6Q3A3	A0A1B6QPP3	A0A1B6Q3A3	Uncharacterized protein.	Uncharacterized protein.	0.497
A0A1B6QPP3	A0A1W0VUC0	A0A1B6QPP3	A0A1W0VUC0	Uncharacterized protein.	Uncharacterized protein.	0.504
A0A1B6QPP3	C5WW32_SORBI	A0A1B6QPP3	C5WW32	Uncharacterized protein.	PORR domain-containing protein.	0.434
A0A1B6QPP3	C5YZ83_SORBI	A0A1B6QPP3	C5YZ83	Uncharacterized protein.	Uncharacterized protein.	0.422
A0A1W0VUC0	A0A1B6QPP3	A0A1W0VUC0	A0A1B6QPP3	Uncharacterized protein.	Uncharacterized protein.	0.504
A0A1W0VUC0	C5YZ83_SORBI	A0A1W0VUC0	C5YZ83	Uncharacterized protein.	Uncharacterized protein.	0.434
C5WW32_SORBI	A0A1B6QP05	C5WW32	A0A1B6QP05	PORR domain-containing protein.	Uncharacterized protein.	0.428
C5WW32_SORBI	A0A1B6QPP3	C5WW32	A0A1B6QPP3	PORR domain-containing protein.	Uncharacterized protein.	0.434
C5WW32_SORBI	C5YZ83_SORBI	C5WW32	C5YZ83	PORR domain-containing protein.	Uncharacterized protein.	0.423
C5XGD6_SORBI	A0A194YMX7	C5XGD6	A0A194YMX7	TCP domain-containing protein.	Myb-like domain-containing protein.	0.487
C5XGD6_SORBI	A0A1B6Q3A3	C5XGD6	A0A1B6Q3A3	TCP domain-containing protein.	Uncharacterized protein.	0.492

page 1 of 2

Server load: low (20%) [HD]

Permalink

Network

Cooccurrence

Textmining

Neighborhood

Experiments

Fusion

Databases

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About