Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CalB | Ljor_0383 | Ljor_0386 | Ljor_0383 | Alcohol dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Hypothetical protein. | 0.491 |
CalB | Ljor_0385 | Ljor_0386 | Ljor_0385 | Alcohol dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Short chain dehydrogenase. | 0.825 |
CalB | dnaQ | Ljor_0386 | Ljor_0382 | Alcohol dehydrogenase; Belongs to the aldehyde dehydrogenase family. | DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. | 0.444 |
CalB | hutH | Ljor_0386 | Ljor_0387 | Alcohol dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Histidine ammonia-lyase (Histidase). | 0.764 |
CalB | hutU | Ljor_0386 | Ljor_0388 | Alcohol dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. | 0.725 |
CalB | rnhA | Ljor_0386 | Ljor_0384 | Alcohol dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.801 |
Ljor_0383 | CalB | Ljor_0383 | Ljor_0386 | Hypothetical protein. | Alcohol dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.491 |
Ljor_0383 | Ljor_0385 | Ljor_0383 | Ljor_0385 | Hypothetical protein. | Short chain dehydrogenase. | 0.491 |
Ljor_0383 | dnaQ | Ljor_0383 | Ljor_0382 | Hypothetical protein. | DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. | 0.491 |
Ljor_0383 | enhA_1 | Ljor_0383 | Ljor_0381 | Hypothetical protein. | Enhanced entry protein EnhA. | 0.411 |
Ljor_0383 | hutH | Ljor_0383 | Ljor_0387 | Hypothetical protein. | Histidine ammonia-lyase (Histidase). | 0.438 |
Ljor_0383 | hutU | Ljor_0383 | Ljor_0388 | Hypothetical protein. | Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. | 0.438 |
Ljor_0383 | rnhA | Ljor_0383 | Ljor_0384 | Hypothetical protein. | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.491 |
Ljor_0385 | CalB | Ljor_0385 | Ljor_0386 | Short chain dehydrogenase. | Alcohol dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.825 |
Ljor_0385 | Ljor_0383 | Ljor_0385 | Ljor_0383 | Short chain dehydrogenase. | Hypothetical protein. | 0.491 |
Ljor_0385 | dnaQ | Ljor_0385 | Ljor_0382 | Short chain dehydrogenase. | DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. | 0.419 |
Ljor_0385 | hutH | Ljor_0385 | Ljor_0387 | Short chain dehydrogenase. | Histidine ammonia-lyase (Histidase). | 0.718 |
Ljor_0385 | hutU | Ljor_0385 | Ljor_0388 | Short chain dehydrogenase. | Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. | 0.718 |
Ljor_0385 | rnhA | Ljor_0385 | Ljor_0384 | Short chain dehydrogenase. | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.812 |
dnaQ | CalB | Ljor_0382 | Ljor_0386 | DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. | Alcohol dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.444 |
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