STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ljor_0417Protein-tyrosine phosphatase. (232 aa)    
Predicted Functional Partners:
Ljor_2291
Cysteine protease.
  
     0.771
SpkB
Protein IcmE (DotG).
  
     0.752
lvrA3
Vir region protein.
  
     0.746
Ljor_2243
Protein LvrA.
  
     0.744
Ljor_2491
Putative membrane protein YdgA-like protein.
  
     0.741
Ljor_1824
DotA.
  
     0.735
Ljor_2685
IcmF.
  
     0.730
Ljor_1090
Zip family transporter.
  
     0.712
Ljor_2742
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
     0.697
Ljor_1215
Protein LvrA.
  
     0.692
Your Current Organism:
Legionella jordanis
NCBI taxonomy Id: 456
Other names: ATCC 33623, CCUG 16413, CIP 105268, DSM 19212, L. jordanis, NCTC 11533, strain BL 540, strain BL-540
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.