STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ljor_1419DNA nickase. (152 aa)    
Predicted Functional Partners:
frmA
Alcohol dehydrogenase.
  
  
 0.776
Ljor_1798
Hypothetical protein.
   
    0.685
treZ
Malto-oligosyltrehalose trehalohydrolase.
   
    0.532
ala_1
D-alanine-aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
       0.497
NdoR
Xylene monooxygenase.
     
 0.474
Ljor_1417
Glutathione-dependent formaldehyde-activating enzyme.
       0.466
Ljor_2268
Hypothetical protein.
 
     0.447
Ljor_1435
Hypothetical protein.
  
     0.446
Ljor_1416
GNAT family acetyltransferase.
       0.428
Ljor_0678
Hypothetical protein.
     
 0.407
Your Current Organism:
Legionella jordanis
NCBI taxonomy Id: 456
Other names: ATCC 33623, CCUG 16413, CIP 105268, DSM 19212, L. jordanis, NCTC 11533, strain BL 540, strain BL-540
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.