Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GadC_1 | PotE_1 | Ljor_2715 | Ljor_1332 | Amino acid antiporter. | Amino acid antiporter. | 0.908 |
GadC_1 | aml | Ljor_2715 | Ljor_1427 | Amino acid antiporter. | Alpha-amylase precursor. | 0.506 |
GadC_1 | gadC | Ljor_2715 | Ljor_2458 | Amino acid antiporter. | Glutamate/gamma-aminobutyrate antiporter. | 0.904 |
GadC_1 | glgE2 | Ljor_2715 | Ljor_1433 | Amino acid antiporter. | Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase 2; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB. | 0.506 |
GadC_1 | lysAC_2 | Ljor_2715 | Ljor_0834 | Amino acid antiporter. | Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC); Belongs to the Orn/Lys/Arg decarboxylase class-II family. | 0.435 |
GadC_1 | pheA | Ljor_2715 | Ljor_2714 | Amino acid antiporter. | P-protein. | 0.887 |
GadC_1 | treS | Ljor_2715 | Ljor_1432 | Amino acid antiporter. | Trehalose synthase/amylase TreS. | 0.506 |
GadC_1 | yveA | Ljor_2715 | Ljor_1828 | Amino acid antiporter. | Aspartate-proton symporter. | 0.547 |
Ljor_2459 | gadC | Ljor_2459 | Ljor_2458 | Coiled-coil protein. | Glutamate/gamma-aminobutyrate antiporter. | 0.765 |
Ljor_2459 | nfdA | Ljor_2459 | Ljor_2457 | Coiled-coil protein. | N-substituted formamide deformylase precursor. | 0.409 |
PotE_1 | GadC_1 | Ljor_1332 | Ljor_2715 | Amino acid antiporter. | Amino acid antiporter. | 0.908 |
PotE_1 | aml | Ljor_1332 | Ljor_1427 | Amino acid antiporter. | Alpha-amylase precursor. | 0.506 |
PotE_1 | gadC | Ljor_1332 | Ljor_2458 | Amino acid antiporter. | Glutamate/gamma-aminobutyrate antiporter. | 0.905 |
PotE_1 | glgE2 | Ljor_1332 | Ljor_1433 | Amino acid antiporter. | Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase 2; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB. | 0.506 |
PotE_1 | lysAC_2 | Ljor_1332 | Ljor_0834 | Amino acid antiporter. | Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC); Belongs to the Orn/Lys/Arg decarboxylase class-II family. | 0.435 |
PotE_1 | pheA | Ljor_1332 | Ljor_2714 | Amino acid antiporter. | P-protein. | 0.456 |
PotE_1 | treS | Ljor_1332 | Ljor_1432 | Amino acid antiporter. | Trehalose synthase/amylase TreS. | 0.506 |
aml | GadC_1 | Ljor_1427 | Ljor_2715 | Alpha-amylase precursor. | Amino acid antiporter. | 0.506 |
aml | PotE_1 | Ljor_1427 | Ljor_1332 | Alpha-amylase precursor. | Amino acid antiporter. | 0.506 |
aml | gadC | Ljor_1427 | Ljor_2458 | Alpha-amylase precursor. | Glutamate/gamma-aminobutyrate antiporter. | 0.506 |
page 1 of 4