Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CtaA | CtaG | Ljor_2640 | Ljor_2128 | Cytochrome c oxidase assembly protein. | Cytochrome c oxidase, assembly transmembrane protein CoxG. | 0.993 |
CtaA | Ljor_2637 | Ljor_2640 | Ljor_2637 | Cytochrome c oxidase assembly protein. | Hypothetical protein. | 0.848 |
CtaA | Ljor_2638 | Ljor_2640 | Ljor_2638 | Cytochrome c oxidase assembly protein. | SURF1 family protein. | 0.990 |
CtaA | Ljor_2639 | Ljor_2640 | Ljor_2639 | Cytochrome c oxidase assembly protein. | Hypothetical protein. | 0.929 |
CtaA | YpmQ | Ljor_2640 | Ljor_2642 | Cytochrome c oxidase assembly protein. | SCO1/SenC family transporter protein. | 0.956 |
CtaA | coxA | Ljor_2640 | Ljor_2129 | Cytochrome c oxidase assembly protein. | Cytochrome c oxidase subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. | 0.877 |
CtaA | coxB | Ljor_2640 | Ljor_2130 | Cytochrome c oxidase assembly protein. | Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | 0.909 |
CtaA | coxC | Ljor_2640 | Ljor_2127 | Cytochrome c oxidase assembly protein. | Cytochrome c oxidase, subunit III. | 0.884 |
CtaA | cyoE | Ljor_2640 | Ljor_2641 | Cytochrome c oxidase assembly protein. | Polyprenyltransferase (cytochrome oxidase assembly factor); Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | 0.999 |
CtaG | CtaA | Ljor_2128 | Ljor_2640 | Cytochrome c oxidase, assembly transmembrane protein CoxG. | Cytochrome c oxidase assembly protein. | 0.993 |
CtaG | Ljor_2638 | Ljor_2128 | Ljor_2638 | Cytochrome c oxidase, assembly transmembrane protein CoxG. | SURF1 family protein. | 0.956 |
CtaG | YpmQ | Ljor_2128 | Ljor_2642 | Cytochrome c oxidase, assembly transmembrane protein CoxG. | SCO1/SenC family transporter protein. | 0.888 |
CtaG | coxA | Ljor_2128 | Ljor_2129 | Cytochrome c oxidase, assembly transmembrane protein CoxG. | Cytochrome c oxidase subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. | 0.922 |
CtaG | coxB | Ljor_2128 | Ljor_2130 | Cytochrome c oxidase, assembly transmembrane protein CoxG. | Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | 0.984 |
CtaG | coxC | Ljor_2128 | Ljor_2127 | Cytochrome c oxidase, assembly transmembrane protein CoxG. | Cytochrome c oxidase, subunit III. | 0.982 |
CtaG | cyoE | Ljor_2128 | Ljor_2641 | Cytochrome c oxidase, assembly transmembrane protein CoxG. | Polyprenyltransferase (cytochrome oxidase assembly factor); Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | 0.995 |
Ljor_2637 | CtaA | Ljor_2637 | Ljor_2640 | Hypothetical protein. | Cytochrome c oxidase assembly protein. | 0.848 |
Ljor_2637 | Ljor_2638 | Ljor_2637 | Ljor_2638 | Hypothetical protein. | SURF1 family protein. | 0.849 |
Ljor_2637 | Ljor_2639 | Ljor_2637 | Ljor_2639 | Hypothetical protein. | Hypothetical protein. | 0.738 |
Ljor_2637 | YpmQ | Ljor_2637 | Ljor_2642 | Hypothetical protein. | SCO1/SenC family transporter protein. | 0.615 |
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