STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9G98_00046CTD kinase subunit alpha; Belongs to the protein kinase superfamily. (489 aa)    
Predicted Functional Partners:
B9G98_02445
CTD kinase subunit beta; Belongs to the cyclin family.
    
 0.980
B9G98_03268
CTD kinase subunit gamma.
    
 
 0.958
B9G98_02213
Cyclin pch1; Belongs to the cyclin family.
    
 0.936
B9G98_02116
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.920
B9G98_02569
Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
    
 0.846
B9G98_01782
WH2 domain-containing protein.
   
 0.801
B9G98_04155
Serine/threonine-protein kinase KIN28; Belongs to the protein kinase superfamily.
  
 
0.771
B9G98_02388
RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.
   
 0.736
B9G98_00262
Uncharacterized protein.
   
 0.735
B9G98_01073
Nitroreductase HBN1.
   
 0.735
Your Current Organism:
Wickerhamiella sorbophila
NCBI taxonomy Id: 45607
Other names: AJ 4995, ATCC 60130, CBS 6739, CCRC 22618, CCRC:22618, Candida sorbophila, NRRL Y-7921, Torulopsis sorbophila, W. sorbophila
Server load: low (26%) [HD]