STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9G98_00311Protein NRD1. (536 aa)    
Predicted Functional Partners:
B9G98_02289
Helicase SEN1.
   
 
 0.948
B9G98_02116
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.884
B9G98_01782
WH2 domain-containing protein.
   
 
 0.785
B9G98_03262
Poly(A) RNA polymerase protein 1.
    
 
 0.775
B9G98_00379
mRNA cap guanine-N7 methyltransferase.
   
 
 0.761
B9G98_04456
Nuclear cap-binding protein subunit 2.
   
 
 0.679
B9G98_02121
Nuclear cap-binding protein complex subunit 1.
   
 
 0.675
B9G98_00478
Uncharacterized protein C4G9.04c.
   
 
 0.649
B9G98_00970
Exosome complex exonuclease RRP6.
   
 
 0.589
B9G98_01457
5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.
   
 
 0.573
Your Current Organism:
Wickerhamiella sorbophila
NCBI taxonomy Id: 45607
Other names: AJ 4995, ATCC 60130, CBS 6739, CCRC 22618, CCRC:22618, Candida sorbophila, NRRL Y-7921, Torulopsis sorbophila, W. sorbophila
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