STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9G98_01001RNA polymerase II-associated protein 1. (364 aa)    
Predicted Functional Partners:
B9G98_02490
RNA polymerase-associated protein LEO1.
   
 0.999
B9G98_02676
Meiotic recombination protein rec14.
   
 0.999
B9G98_02851
Cell division control protein 73.
   
 0.999
B9G98_02931
Tetratricopeptide repeat protein 1.
   
 0.999
B9G98_01425
Plus3 domain-containing protein.
   
 0.994
B9G98_01625
FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...]
   
 0.991
B9G98_04477
FACT complex subunit spt16.
    
 0.982
B9G98_00035
DNA-directed RNA polymerase II subunit RPB3.
   
 0.946
B9G98_02569
Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
   
 0.944
B9G98_03155
Glucose-repressible alcohol dehydrogenase transcriptional effector.
    
   0.921
Your Current Organism:
Wickerhamiella sorbophila
NCBI taxonomy Id: 45607
Other names: AJ 4995, ATCC 60130, CBS 6739, CCRC 22618, CCRC:22618, Candida sorbophila, NRRL Y-7921, Torulopsis sorbophila, W. sorbophila
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.