STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9G98_02964Transcription initiation factor TFIID subunit 13. (145 aa)    
Predicted Functional Partners:
B9G98_00334
Transcription initiation factor TFIID subunit 4.
    
 0.999
B9G98_00566
Transcription initiation factor TFIID subunit 5.
    
 0.999
B9G98_00592
Transcription initiation factor TFIID subunit 6.
    
 0.999
B9G98_00849
Transcription initiation factor TFIID subunit 12.
   
 0.999
B9G98_01112
Transcription initiation factor TFIID subunit 11.
    
 0.999
B9G98_01970
Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]
   
 0.999
B9G98_02389
Transcription initiation factor TFIID subunit 8.
    
 0.999
B9G98_03028
TATA-box-binding protein.
   
 0.999
B9G98_03454
Transcription initiation factor TFIID subunit.
    
 0.999
B9G98_03984
Transcription initiation factor TFIID subunit 9.
   
 0.999
Your Current Organism:
Wickerhamiella sorbophila
NCBI taxonomy Id: 45607
Other names: AJ 4995, ATCC 60130, CBS 6739, CCRC 22618, CCRC:22618, Candida sorbophila, NRRL Y-7921, Torulopsis sorbophila, W. sorbophila
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.