STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9G98_03628ATP-dependent RNA helicase DHH1; Belongs to the DEAD box helicase family. (574 aa)    
Predicted Functional Partners:
B9G98_03093
Enhancer of mRNA-decapping protein 3.
    
 0.999
B9G98_04347
mRNA-decapping enzyme subunit 1.
   
 0.999
LSM1
U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.
    
 0.995
B9G98_00571
DNA topoisomerase 2-associated protein pat1.
   
 0.995
B9G98_01460
U6 snRNA-associated Sm-like protein LSm7.
    
 0.994
B9G98_00037
Protein decapping 5.
   
 
 0.993
B9G98_02421
General negative regulator of transcription subunit 1.
   
 0.985
B9G98_02870
Poly(A) ribonuclease pop2.
   
 0.978
B9G98_04698
General negative regulator of transcription subunit 4.
    
 0.970
B9G98_03155
Glucose-repressible alcohol dehydrogenase transcriptional effector.
    
 0.963
Your Current Organism:
Wickerhamiella sorbophila
NCBI taxonomy Id: 45607
Other names: AJ 4995, ATCC 60130, CBS 6739, CCRC 22618, CCRC:22618, Candida sorbophila, NRRL Y-7921, Torulopsis sorbophila, W. sorbophila
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.