STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9G98_03796Pumilio domain-containing protein C6G9.14. (685 aa)    
Predicted Functional Partners:
B9G98_02870
Poly(A) ribonuclease pop2.
    
 
 0.648
B9G98_01864
Pumilio y domain family member 6.
    
 
 0.580
B9G98_03628
ATP-dependent RNA helicase DHH1; Belongs to the DEAD box helicase family.
    
 
 0.577
B9G98_03155
Glucose-repressible alcohol dehydrogenase transcriptional effector.
    
 
 0.555
B9G98_00506
Pre-mRNA-processing protein 45.
    
  0.554
B9G98_04247
Pre-mRNA-splicing factor CLF1.
    
  0.506
B9G98_00059
Rho-type GTPase-activating protein 1.
    
 
 0.502
B9G98_04401
Virulence protein SSD1.
   
   0.499
B9G98_01719
Pre-mRNA-splicing factor SLT11.
     
 0.496
B9G98_00626
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.491
Your Current Organism:
Wickerhamiella sorbophila
NCBI taxonomy Id: 45607
Other names: AJ 4995, ATCC 60130, CBS 6739, CCRC 22618, CCRC:22618, Candida sorbophila, NRRL Y-7921, Torulopsis sorbophila, W. sorbophila
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