STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9G98_04508Putative RNA-binding protein C22E12.02. (152 aa)    
Predicted Functional Partners:
B9G98_02928
Protein transport protein SEC9.
    
 0.825
B9G98_00536
U4/U6.U5 tri-snRNP-associated protein snu66.
   
 0.800
B9G98_01009
Small nuclear ribonucleoprotein F.
    
 0.783
B9G98_00404
U4/U6 small nuclear ribonucleoprotein Prp31.
   
 0.737
B9G98_00408
Uncharacterized protein.
    
 0.734
B9G98_02164
Small nuclear ribonucleoprotein Sm D2.
   
  0.732
B9G98_03203
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
  0.725
B9G98_04017
U4/U6 small nuclear ribonucleoprotein Prp3.
   
  0.704
LSM5
U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.
    
  0.681
B9G98_01460
U6 snRNA-associated Sm-like protein LSm7.
   
  0.678
Your Current Organism:
Wickerhamiella sorbophila
NCBI taxonomy Id: 45607
Other names: AJ 4995, ATCC 60130, CBS 6739, CCRC 22618, CCRC:22618, Candida sorbophila, NRRL Y-7921, Torulopsis sorbophila, W. sorbophila
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