STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALF60005.1Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)    
Predicted Functional Partners:
ALF60010.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.979
ALF60009.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.975
ALF60006.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.
 
 0.972
ALF60007.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.
 
 0.969
ALF60008.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.967
ALF60227.1
Cysteine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.791
ALF60018.1
Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.774
ALF60017.1
Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.751
ALF60226.1
Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.
 
  
 0.677
msbA
Lipid transporter ATP-binding/permease; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
 
    
0.548
Your Current Organism:
Psychrobacter urativorans
NCBI taxonomy Id: 45610
Other names: ACAM 534, ATCC 15174, CCUG 4982, CIP 105100, DSM 14009, Micrococcus cryophilus, P. urativorans, Psychrobacter uratovorans
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