STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xpsDType II secretion system protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology. (763 aa)    
Predicted Functional Partners:
xpsN
General secretion pathway protein GspN; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.982
xpsG
Type II secretion system protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.976
xpsI
General secretion pathway protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.961
xpsH
Type II secretion system protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.960
xpsK
General secretion pathway protein GspK; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.958
xpsJ
General secretion pathway protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.954
xpsE
Type II secretion system protein GspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.950
xpsL
General secretion pathway protein GspL; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.949
xcsD
Type II secretion system protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
0.935
xcsC
Type II secretion system protein C; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.924
Your Current Organism:
Xanthomonas euvesicatoria
NCBI taxonomy Id: 456327
Other names: ATCC 11633, Bacterium vesicatorium, DSM 19128, ICMP 109, ICMP 98, NCPPB 2968, X. euvesicatoria, Xanthomonas campestris (pv. vesicatoria), Xanthomonas campestris pv. Vesicatoria type A, Xanthomonas campestris pv. vesicatoria, Xanthomonas euvesicatoria Jones et al. 2006 emend. Constantin et al. 2016
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