STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilSHypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (537 aa)    
Predicted Functional Partners:
pilR
Sigma-54-dependent Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.995
rpoN2
RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
     
 0.916
rpoN1
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
     
 0.916
pilM
Pilus assembly protein PilM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.879
pilG
Pilus assembly protein PilG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.855
pilP
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.832
APO91458.1
Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.826
pilH
Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.814
pilO
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.812
pilL
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.811
Your Current Organism:
Xanthomonas euvesicatoria
NCBI taxonomy Id: 456327
Other names: ATCC 11633, Bacterium vesicatorium, DSM 19128, ICMP 109, ICMP 98, NCPPB 2968, X. euvesicatoria, Xanthomonas campestris (pv. vesicatoria), Xanthomonas campestris pv. Vesicatoria type A, Xanthomonas campestris pv. vesicatoria, Xanthomonas euvesicatoria Jones et al. 2006 emend. Constantin et al. 2016
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