Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
amiC-2 | mtgA | BJD11_13460 | BJD11_06885 | N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. | 0.577 |
amiC-2 | nlpC1 | BJD11_13460 | BJD11_08310 | N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.550 |
amiC-2 | nlpC2 | BJD11_13460 | BJD11_08305 | N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.490 |
fliL | nlpC1 | BJD11_12460 | BJD11_08310 | Flagellar basal body protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.427 |
fliL | nlpC2 | BJD11_12460 | BJD11_08305 | Flagellar basal body protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.427 |
mtgA | amiC-2 | BJD11_06885 | BJD11_13460 | Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. | N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.577 |
mtgA | nlpC1 | BJD11_06885 | BJD11_08310 | Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. | Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.504 |
mtgA | nlpC2 | BJD11_06885 | BJD11_08305 | Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.485 |
nlpC1 | amiC-2 | BJD11_08310 | BJD11_13460 | Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.550 |
nlpC1 | fliL | BJD11_08310 | BJD11_12460 | Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Flagellar basal body protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | 0.427 |
nlpC1 | mtgA | BJD11_08310 | BJD11_06885 | Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. | 0.504 |
nlpC1 | nlpC2 | BJD11_08310 | BJD11_08305 | Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.631 |
nlpC2 | amiC-2 | BJD11_08305 | BJD11_13460 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.490 |
nlpC2 | fliL | BJD11_08305 | BJD11_12460 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Flagellar basal body protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | 0.427 |
nlpC2 | mtgA | BJD11_08305 | BJD11_06885 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. | 0.485 |
nlpC2 | nlpC1 | BJD11_08305 | BJD11_08310 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.631 |