node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
APO90301.1 | lig3 | BJD11_09815 | BJD11_09820 | DUF3606 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA ligase D; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.752 |
APO91283.1 | APO92455.1 | BJD11_15685 | BJD11_22750 | DNA ligase-associated DEXH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.529 |
APO91283.1 | lig3 | BJD11_15685 | BJD11_09820 | DNA ligase-associated DEXH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA ligase D; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.812 |
APO91283.1 | polA | BJD11_15685 | BJD11_24395 | DNA ligase-associated DEXH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.733 |
APO92455.1 | APO91283.1 | BJD11_22750 | BJD11_15685 | DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA ligase-associated DEXH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.529 |
APO92455.1 | ku | BJD11_22750 | BJD11_22365 | DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.610 |
APO92455.1 | lig3 | BJD11_22750 | BJD11_09820 | DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA ligase D; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.677 |
APO92455.1 | polA | BJD11_22750 | BJD11_24395 | DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.483 |
dnaN | exo | BJD11_22940 | BJD11_18030 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Exodeoxyribonuclease IX; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.958 |
dnaN | holB | BJD11_22940 | BJD11_16900 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.999 |
dnaN | lig3 | BJD11_22940 | BJD11_09820 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA ligase D; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.936 |
dnaN | polA | BJD11_22940 | BJD11_24395 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.995 |
dnaN | xthA1 | BJD11_22940 | BJD11_12020 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.701 |
dnaN | xthA2 | BJD11_22940 | BJD11_24040 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.701 |
exo | dnaN | BJD11_18030 | BJD11_22940 | Exodeoxyribonuclease IX; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.958 |
exo | holB | BJD11_18030 | BJD11_16900 | Exodeoxyribonuclease IX; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.797 |
exo | lig3 | BJD11_18030 | BJD11_09820 | Exodeoxyribonuclease IX; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA ligase D; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.697 |
exo | polA | BJD11_18030 | BJD11_24395 | Exodeoxyribonuclease IX; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.673 |
exo | xthA1 | BJD11_18030 | BJD11_12020 | Exodeoxyribonuclease IX; Derived by automated computational analysis using gene prediction method: Protein Homology. | Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.508 |
exo | xthA2 | BJD11_18030 | BJD11_24040 | Exodeoxyribonuclease IX; Derived by automated computational analysis using gene prediction method: Protein Homology. | Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.508 |