STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trbLP-type conjugative transfer protein TrbL; Derived by automated computational analysis using gene prediction method: Protein Homology. (549 aa)    
Predicted Functional Partners:
trbK
Entry exclusion lipoprotein TrbK; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.940
APO90147.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.710
BJD11_10485
Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.
  
     0.710
APO90423.1
Replication protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.692
virD4
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.671
APO90596.1
Toxin of toxin-antitoxin system; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.647
virB9
Type IV secretion system protein VirB9; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.576
APO90150.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.576
oprN6
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.569
oprN7
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.524
Your Current Organism:
Xanthomonas euvesicatoria
NCBI taxonomy Id: 456327
Other names: ATCC 11633, Bacterium vesicatorium, DSM 19128, ICMP 109, ICMP 98, NCPPB 2968, X. euvesicatoria, Xanthomonas campestris (pv. vesicatoria), Xanthomonas campestris pv. Vesicatoria type A, Xanthomonas campestris pv. vesicatoria, Xanthomonas euvesicatoria Jones et al. 2006 emend. Constantin et al. 2016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.