STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
feoAFerrous iron transport protein A; Derived by automated computational analysis using gene prediction method: Protein Homology. (82 aa)    
Predicted Functional Partners:
feoB
Ferrous iron transporter B; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.999
APO90819.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.812
BJD11_18410
Hemin transport protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.693
pcp
Peptidoglycan-associated outer membrane lipoprotein precursor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.603
APO90818.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.594
APO90822.1
enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.587
exbD2
Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.586
APO90823.1
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.539
oprB
Carbohydrate porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.501
nfuA
Fe-S biogenesis protein NfuA; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
     
 0.487
Your Current Organism:
Xanthomonas euvesicatoria
NCBI taxonomy Id: 456327
Other names: ATCC 11633, Bacterium vesicatorium, DSM 19128, ICMP 109, ICMP 98, NCPPB 2968, X. euvesicatoria, Xanthomonas campestris (pv. vesicatoria), Xanthomonas campestris pv. Vesicatoria type A, Xanthomonas campestris pv. vesicatoria, Xanthomonas euvesicatoria Jones et al. 2006 emend. Constantin et al. 2016
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