STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APO93141.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)    
Predicted Functional Partners:
APO92397.1
Carotenoid oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.905
APO91195.1
Penicillin acylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.521
APO91949.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.521
APO91957.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.521
APO90278.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.478
APO92551.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.478
lldD
Alpha-hydroxy-acid oxidizing enzyme; Catalyzes the conversion of L-lactate to pyruvate. Is coupled to the respiratory chain; Belongs to the FMN-dependent alpha-hydroxy acid dehydrogenase family.
       0.436
APO92396.1
protein-S-isoprenylcysteine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.435
Your Current Organism:
Xanthomonas euvesicatoria
NCBI taxonomy Id: 456327
Other names: ATCC 11633, Bacterium vesicatorium, DSM 19128, ICMP 109, ICMP 98, NCPPB 2968, X. euvesicatoria, Xanthomonas campestris (pv. vesicatoria), Xanthomonas campestris pv. Vesicatoria type A, Xanthomonas campestris pv. vesicatoria, Xanthomonas euvesicatoria Jones et al. 2006 emend. Constantin et al. 2016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.