Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KXT69653.1 | KXT71092.1 | SCRDD08_01167 | SCRDD08_00171 | GTP pyrophosphokinase. | Hypothetical protein. | 0.441 |
KXT69653.1 | TrmE | SCRDD08_01167 | SCRDD08_01573 | GTP pyrophosphokinase. | GTPase and tRNA-U34 5-formylation enzyme TrmE. | 0.699 |
KXT71090.1 | KXT71091.1 | SCRDD08_00169 | SCRDD08_00170 | Hypothetical protein. | Hypothetical protein. | 0.773 |
KXT71090.1 | KXT71092.1 | SCRDD08_00169 | SCRDD08_00171 | Hypothetical protein. | Hypothetical protein. | 0.406 |
KXT71091.1 | KXT71090.1 | SCRDD08_00170 | SCRDD08_00169 | Hypothetical protein. | Hypothetical protein. | 0.773 |
KXT71091.1 | KXT71092.1 | SCRDD08_00170 | SCRDD08_00171 | Hypothetical protein. | Hypothetical protein. | 0.406 |
KXT71092.1 | KXT69653.1 | SCRDD08_00171 | SCRDD08_01167 | Hypothetical protein. | GTP pyrophosphokinase. | 0.441 |
KXT71092.1 | KXT71090.1 | SCRDD08_00171 | SCRDD08_00169 | Hypothetical protein. | Hypothetical protein. | 0.406 |
KXT71092.1 | KXT71091.1 | SCRDD08_00171 | SCRDD08_00170 | Hypothetical protein. | Hypothetical protein. | 0.406 |
KXT71092.1 | KXT71093.1 | SCRDD08_00171 | SCRDD08_00172 | Hypothetical protein. | Hypothetical protein. | 0.410 |
KXT71092.1 | TrmE | SCRDD08_00171 | SCRDD08_01573 | Hypothetical protein. | GTPase and tRNA-U34 5-formylation enzyme TrmE. | 0.695 |
KXT71092.1 | rnpA | SCRDD08_00171 | SCRDD08_00379 | Hypothetical protein. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.426 |
KXT71092.1 | rsmG | SCRDD08_00171 | SCRDD08_01931 | Hypothetical protein. | rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | 0.533 |
KXT71092.1 | topA | SCRDD08_00171 | SCRDD08_01201 | Hypothetical protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.489 |
KXT71093.1 | KXT71092.1 | SCRDD08_00172 | SCRDD08_00171 | Hypothetical protein. | Hypothetical protein. | 0.410 |
TrmE | KXT69653.1 | SCRDD08_01573 | SCRDD08_01167 | GTPase and tRNA-U34 5-formylation enzyme TrmE. | GTP pyrophosphokinase. | 0.699 |
TrmE | KXT71092.1 | SCRDD08_01573 | SCRDD08_00171 | GTPase and tRNA-U34 5-formylation enzyme TrmE. | Hypothetical protein. | 0.695 |
TrmE | rnpA | SCRDD08_01573 | SCRDD08_00379 | GTPase and tRNA-U34 5-formylation enzyme TrmE. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.503 |
TrmE | rsmG | SCRDD08_01573 | SCRDD08_01931 | GTPase and tRNA-U34 5-formylation enzyme TrmE. | rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | 0.846 |
TrmE | topA | SCRDD08_01573 | SCRDD08_01201 | GTPase and tRNA-U34 5-formylation enzyme TrmE. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.496 |
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