STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_0029PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mhu:Mhun_1746 4Fe-4S ferredoxin, iron-sulfur binding. (132 aa)    
Predicted Functional Partners:
Mboo_0024
NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: mhu:Mhun_1741 NADH dehydrogenase (quinone).
 
 
 0.999
Mboo_1123
PFAM: NADH-ubiquinone oxidoreductase, chain 49kDa; NADH dehydrogenase (ubiquinone), 30 kDa subunit; KEGG: mma:MM1063 formate hydrogenlyase subunit 5 precursor.
  
 0.999
Mboo_0026
PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: mhu:Mhun_1743 NADH ubiquinone oxidoreductase, 20 kDa subunit.
 
 
 0.993
Mboo_0025
PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: mhu:Mhun_1742 respiratory-chain NADH dehydrogenase, subunit 1.
 
 
 0.992
Mboo_0028
NADH dehydrogenase (ubiquinone); PFAM: NADH-ubiquinone oxidoreductase, chain 49kDa; KEGG: mhu:Mhun_1745 NADH-ubiquinone oxidoreductase, chain 49kDa; Belongs to the complex I 49 kDa subunit family.
 
 
 0.991
Mboo_1122
PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: deh:cbdb_A1652 hydrogenase, group 4, HycG subunit.
 
 
 0.955
Mboo_1126
KEGG: mma:MM1060 formate hydrogenlyase subunit 4.
  
 
 0.932
Mboo_0086
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mhu:Mhun_3053 succinate dehydrogenase.
  
 
 0.895
Mboo_0027
PFAM: NADH dehydrogenase (ubiquinone), 30 kDa subunit; KEGG: mhu:Mhun_1744 Ech hydrogenase, subunit EchD, putative.
 
     0.842
Mboo_1124
NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: mac:MA4371 NADH dehydrogenase subunit N.
  
 
 0.841
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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