STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_0041PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: pca:Pcar_0166 nitroimidazole resistance protein-like. (152 aa)    
Predicted Functional Partners:
Mboo_1927
PFAM: protein of unknown function DUF75; KEGG: mhu:Mhun_0058 hypothetical protein.
  
    0.651
Mboo_1928
KEGG: mhu:Mhun_0057 protein of unknown function DUF473.
   
    0.624
Mboo_0040
PFAM: Radical SAM domain protein; KEGG: mhu:Mhun_2970 hypothetical protein.
       0.589
fni
Isopentenyl-diphosphate delta-isomerase, type 2; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
  
    0.426
Mboo_0039
KEGG: mtp:Mthe_0107 hypothetical protein.
       0.416
Mboo_0492
PFAM: Lactate/malate dehydrogenase; KEGG: mhu:Mhun_2343 L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily.
  
    0.404
Mboo_1109
PFAM: Lactate/malate dehydrogenase; KEGG: mhu:Mhun_1155 lactate/malate dehydrogenase; Belongs to the LDH/MDH superfamily.
  
    0.404
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.