STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_0043PFAM: beta-lactamase domain protein; KEGG: mhu:Mhun_2460 beta-lactamase-like. (200 aa)    
Predicted Functional Partners:
Mboo_1251
PFAM: beta-lactamase domain protein; KEGG: mhu:Mhun_0123 beta-lactamase-like.
  
  
  0.927
Mboo_0780
PFAM: beta-lactamase domain protein; KEGG: gsu:GSU2769 metallo-beta-lactamase family protein.
  
  
 
0.920
Mboo_0042
PFAM: protein of unknown function DUF123; KEGG: mba:Mbar_A0396 endonuclease III.
       0.858
Mboo_0044
PFAM: thiamine biosynthesis protein ThiC; KEGG: mhu:Mhun_2459 thiamine biosynthesis protein ThiC.
     
 0.610
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family.
   
 
 0.582
Mboo_0218
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: sru:SRU_2458 low molecular weight phosphotyrosine protein phosphatase.
  
 
 0.533
Mboo_2401
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: mhu:Mhun_0874 protein tyrosine phosphatase.
  
 
 0.533
rpl37e
Ribosomal protein L37e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family.
  
   0.528
rps17
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
  
   0.527
Mboo_1645
PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: aae:aq_038 3-hydroxyisobutyrate dehydrogenase.
 
  
 0.415
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.